<h1 id="october-24-2014">October 24, 2014</h1>
<ul>
<li>Added 2 published studies:<ul>
<li><a href="index.do?cancer_study_id=prad_mskcc_2014">Prostate Adenocarcinoma-CNA data (MSKCC, PNAS 2014)</a></li>
<li><a href="study?id=prad_mskcc_cheny1_organoids_2014">Prostate Adenocarcinoma Organoids (MSKCC, Cell 2014)</a></li>
</ul>
</li>
</ul>
<h1 id="may-12-2014">May 12, 2014</h1>
<ul>
<li>Improved study summary page including survival analysis based on clinical attributes
<br/><img alt="Study view" src="images/previews/study_view.png" /></li>
</ul>
<h1 id="april-5-2014">April 5, 2014</h1>
<ul>
<li>New features:<ul>
<li>Visualizing and comparing multiple tumor samples in the patient-centric view</li>
<li>Visualizing clinical events (diagnostics, lab tests, treatment, etc.) in the patient-centric view
<br/><img alt="3D viewer &amp; Co-expression" src="images/previews/multitumor-and-timeline.png" /></li>
</ul>
</li>
</ul>
<h1 id="march-27-2014">March 27, 2014</h1>
<ul>
<li>New features:<ul>
<li>Visualizing of mutations mapped on 3D structures (individual or multiple mutations, directly in the browser)</li>
<li>Gene expression correlation analysis (find all genes with expression correlation to your query genes)</li>
<li>The Patient-Centric View now displays mutation frequencies across all cohorts in cBioPortal for each mutation</li>
<li>The Mutation Details Tab and the Patient-Centric View now display the copy-number status of each mutation
<br/><img alt="3D viewer &amp; Co-expression" src="images/previews/news_3d_coexp.png" /></li>
</ul>
</li>
</ul>
<h1 id="october-18-2013">October 18, 2013</h1>
<ul>
<li>Improved interface for survival plots, including information on individual samples via mouse-over</li>
<li>New fusion glyph in OncoPrints</li>
<li>Improved cross-cancer query: new alteration frequency histogram (example below - query gene: CDKN2A) and mutation diagram
<center><img alt="Cross Cancer Query" src="images/previews/cross_cancer.png" /></center></li>
</ul>
<h1 id="september-5-2013">September 5, 2013:</h1>
<ul>
<li>Linked to BAM files for single mutations via IGV.</li>
<li>Updated COSMIC data (v66 Release)</li>
<li>Improved / interactive visualization on the "Protein changes" tab</li>
<li>Enhanced mutation diagrams: color-coding by mutation time and syncing with table filters</li>
<li>Addition of DNA cytoband information in the patient view of copy-number changes</li>
<li>OncoPrints now allow the display of an optional track with clinical annotation (Endometrial cancer example below)
<center><img alt="Oncoprint with clinical track" src="images/previews/oncoprint_clinical_track.png" /></center></li>
</ul>
<h1 id="july-25-2013">July 25, 2013</h1>
<ul>
<li>Multi-gene correlation plots.</li>
<li>Variant allele frequency distribution plots for individual tumor samples.</li>
<li>Tissue images for TCGA samples in the patient view, via <a href="http://cancer.digitalslidearchive.net/">Digital Slide Archive</a>. <a href="patient/studyId=prad_tcga&amp;caseId=TCGA-CH-5788&tab=tissueImageTab">Example</a>.</li>
<li>Support for multiple tumor samples for a single patient. <a href="patient/studyId=prad_mich&amp;caseId=WA43">Example</a>.</li>
</ul>
<h1 id="july-16-2013">July 16, 2013</h1>
<ul>
<li>Data of TCGA prostate study updated to the May Firehose run (May 23, 2012).</li>
</ul>
<h1 id="june-4-2013">June 4, 2013</h1>
<ul>
<li>Data of TCGA prostate study updated to the April Firehose run (April 21, 2012).</li>
</ul>
<h1 id="april-28-2013">April 28, 2013</h1>
<ul>
<li>Data of TCGA prostate study updated to the March Firehose run (March 26, 2012).</li>
<li>mRNA percentiles for altered genes shown in patient view.</li>
</ul>
<h1 id="april-2-2013">April 2, 2013</h1>
<ul>
<li>Data of TCGA prostate study updated to the February Firehose run (February 22, 2012).</li>
<li>SU2C prostate study now has 21 tumors.</li>
</ul>
<h1 id="january-25-2013">January 25, 2013</h1>
<ul>
<li>Initial release with data from four studies:<ul>
<li>The Cancer Genome Atlas - latest data from 172 primary tumors</li>
<li>Barbieri et al. (Broad/Cornell) - 112 primary tumors</li>
<li>Grasso et al. (Michigan) - 61 metastatic and 11 primary tumors</li>
<li>Taylor et al. (MSKCC) - 181 primary and 37 metastatic tumors</li>
<li>SU2C prostate study - 1 case.</li>
</ul>
</li>
</ul>
